PoplarV1, Main, Exploration, bibRecord, 001D34

Genome-wide identification and expression profiling of the copper transporter gene family in Populus trichocarpa.

Identifieur interne : 001D34 ( Main/Exploration ); précédent : 001D33; suivant : 001D35

Genome-wide identification and expression profiling of the copper transporter gene family in Populus trichocarpa.

Auteurs : Haizhen Zhang [République populaire de Chine] ; Jingli Yang [République populaire de Chine] ; Weida Wang [République populaire de Chine] ; Dandan Li [République populaire de Chine] ; Xiaoqing Hu [République populaire de Chine] ; Han Wang [République populaire de Chine] ; Ming Wei [République populaire de Chine] ; Quangang Liu [République populaire de Chine] ; Zhanchao Wang [République populaire de Chine] ; Chenghao Li [République populaire de Chine]

Source :

Plant physiology and biochemistry : PPB [ 1873-2690 ] ; 2015.

RBID : pubmed:26581045

Descripteurs français

English descriptors

KwdEn :
- Amino Acid Sequence (MeSH), Biological Transport (genetics), Chromosomes, Plant (genetics), Copper (metabolism), Gene Duplication (MeSH), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (MeSH), Genes, Plant (MeSH), Genome, Plant (MeSH), Membrane Transport Proteins (chemistry), Membrane Transport Proteins (genetics), Membrane Transport Proteins (metabolism), Multigene Family (MeSH), Organ Specificity (genetics), Phylogeny (MeSH), Plant Proteins (chemistry), Plant Proteins (genetics), Plant Proteins (metabolism), Populus (genetics), Promoter Regions, Genetic (genetics), Sequence Alignment (MeSH), Stress, Physiological (genetics), Subcellular Fractions (metabolism).
MESH :
- chemical , chemistry : Membrane Transport Proteins, Plant Proteins.
- chemical , genetics : Membrane Transport Proteins, Plant Proteins.
- chemical , metabolism : Copper, Membrane Transport Proteins, Plant Proteins.
- genetics : Biological Transport, Chromosomes, Plant, Organ Specificity, Populus, Promoter Regions, Genetic, Stress, Physiological.
- metabolism : Subcellular Fractions.
- Amino Acid Sequence, Gene Duplication, Gene Expression Profiling, Gene Expression Regulation, Plant, Genes, Plant, Genome, Plant, Multigene Family, Phylogeny, Sequence Alignment.

Abstract

Copper transporters (COPT/Ctr) have important roles in the transport of copper (Cu) across the cell membrane in many different species. A comprehensive phylogeny and a molecular structure analysis of the COPT/Ctr family in plants and animals are presented, with an emphasis and bioinformatic analysis of the copper transporter family in Populus trichocarpa (PtCOPT). Structural analyses of PtCOPTs showed that most have 3 transmembrane domains (TMDs), with an exception of PtCOPT4 (2 TMDs). Gene structure, gene chromosomal location, and synteny analyses of PtCOPTs demonstrated that tandem and segmental duplications have likely contributed to the expansion and evolution of the PtCOPTs. Additionally, promoter analyses showed that the function of PtCOPTs is related to Cu and ferrum (Fe) transport. Tissue-specific expression of PtCOPT genes showed that most had relatively high transcript levels in roots and leaves. Quantitative real-time RT-PCR (qRT-PCR) analysis revealed that the expression of PtCOPT genes were induced not only in limited and excessive Cu, Fe, zinc (Zn) and manganese (Mn) stress, but also in lead (Pb), and cadmium (Cd) stress.

DOI: 10.1016/j.plaphy.2015.10.035
PubMed: 26581045

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 001A23
to stream Main, to step Curation: 001A23

Le document en format XML

<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome-wide identification and expression profiling of the copper transporter gene family in Populus trichocarpa.</title>
<author><name sortKey="Zhang, Haizhen" sort="Zhang, Haizhen" uniqKey="Zhang H" first="Haizhen" last="Zhang">Haizhen Zhang</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040</wicri:regionArea>
<wicri:noRegion>Heilongjiang 150040</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Yang, Jingli" sort="Yang, Jingli" uniqKey="Yang J" first="Jingli" last="Yang">Jingli Yang</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040</wicri:regionArea>
<wicri:noRegion>Heilongjiang 150040</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Wang, Weida" sort="Wang, Weida" uniqKey="Wang W" first="Weida" last="Wang">Weida Wang</name>
<affiliation wicri:level="1"><nlm:affiliation>Wildlife Protection Department, Inner Mongolia Forestry Industrial Group, Yakeshi, Inner Mongolia 022150, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Wildlife Protection Department, Inner Mongolia Forestry Industrial Group, Yakeshi, Inner Mongolia 022150</wicri:regionArea>
<wicri:noRegion>Inner Mongolia 022150</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Li, Dandan" sort="Li, Dandan" uniqKey="Li D" first="Dandan" last="Li">Dandan Li</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040</wicri:regionArea>
<wicri:noRegion>Heilongjiang 150040</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Hu, Xiaoqing" sort="Hu, Xiaoqing" uniqKey="Hu X" first="Xiaoqing" last="Hu">Xiaoqing Hu</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040</wicri:regionArea>
<wicri:noRegion>Heilongjiang 150040</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Wang, Han" sort="Wang, Han" uniqKey="Wang H" first="Han" last="Wang">Han Wang</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040</wicri:regionArea>
<wicri:noRegion>Heilongjiang 150040</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Wei, Ming" sort="Wei, Ming" uniqKey="Wei M" first="Ming" last="Wei">Ming Wei</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040</wicri:regionArea>
<wicri:noRegion>Heilongjiang 150040</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Liu, Quangang" sort="Liu, Quangang" uniqKey="Liu Q" first="Quangang" last="Liu">Quangang Liu</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040</wicri:regionArea>
<wicri:noRegion>Heilongjiang 150040</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Wang, Zhanchao" sort="Wang, Zhanchao" uniqKey="Wang Z" first="Zhanchao" last="Wang">Zhanchao Wang</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040</wicri:regionArea>
<wicri:noRegion>Heilongjiang 150040</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Li, Chenghao" sort="Li, Chenghao" uniqKey="Li C" first="Chenghao" last="Li">Chenghao Li</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China. Electronic address: chli0@163.com.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040</wicri:regionArea>
<wicri:noRegion>Heilongjiang 150040</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2015">2015</date>
<idno type="RBID">pubmed:26581045</idno>
<idno type="pmid">26581045</idno>
<idno type="doi">10.1016/j.plaphy.2015.10.035</idno>
<idno type="wicri:Area/Main/Corpus">001A23</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001A23</idno>
<idno type="wicri:Area/Main/Curation">001A23</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">001A23</idno>
<idno type="wicri:Area/Main/Exploration">001A23</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Genome-wide identification and expression profiling of the copper transporter gene family in Populus trichocarpa.</title>
<author><name sortKey="Zhang, Haizhen" sort="Zhang, Haizhen" uniqKey="Zhang H" first="Haizhen" last="Zhang">Haizhen Zhang</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040</wicri:regionArea>
<wicri:noRegion>Heilongjiang 150040</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Yang, Jingli" sort="Yang, Jingli" uniqKey="Yang J" first="Jingli" last="Yang">Jingli Yang</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040</wicri:regionArea>
<wicri:noRegion>Heilongjiang 150040</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Wang, Weida" sort="Wang, Weida" uniqKey="Wang W" first="Weida" last="Wang">Weida Wang</name>
<affiliation wicri:level="1"><nlm:affiliation>Wildlife Protection Department, Inner Mongolia Forestry Industrial Group, Yakeshi, Inner Mongolia 022150, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Wildlife Protection Department, Inner Mongolia Forestry Industrial Group, Yakeshi, Inner Mongolia 022150</wicri:regionArea>
<wicri:noRegion>Inner Mongolia 022150</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Li, Dandan" sort="Li, Dandan" uniqKey="Li D" first="Dandan" last="Li">Dandan Li</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040</wicri:regionArea>
<wicri:noRegion>Heilongjiang 150040</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Hu, Xiaoqing" sort="Hu, Xiaoqing" uniqKey="Hu X" first="Xiaoqing" last="Hu">Xiaoqing Hu</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040</wicri:regionArea>
<wicri:noRegion>Heilongjiang 150040</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Wang, Han" sort="Wang, Han" uniqKey="Wang H" first="Han" last="Wang">Han Wang</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040</wicri:regionArea>
<wicri:noRegion>Heilongjiang 150040</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Wei, Ming" sort="Wei, Ming" uniqKey="Wei M" first="Ming" last="Wei">Ming Wei</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040</wicri:regionArea>
<wicri:noRegion>Heilongjiang 150040</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Liu, Quangang" sort="Liu, Quangang" uniqKey="Liu Q" first="Quangang" last="Liu">Quangang Liu</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040</wicri:regionArea>
<wicri:noRegion>Heilongjiang 150040</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Wang, Zhanchao" sort="Wang, Zhanchao" uniqKey="Wang Z" first="Zhanchao" last="Wang">Zhanchao Wang</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040</wicri:regionArea>
<wicri:noRegion>Heilongjiang 150040</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Li, Chenghao" sort="Li, Chenghao" uniqKey="Li C" first="Chenghao" last="Li">Chenghao Li</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China. Electronic address: chli0@163.com.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040</wicri:regionArea>
<wicri:noRegion>Heilongjiang 150040</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">Plant physiology and biochemistry : PPB</title>
<idno type="eISSN">1873-2690</idno>
<imprint><date when="2015" type="published">2015</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence (MeSH)</term>
<term>Biological Transport (genetics)</term>
<term>Chromosomes, Plant (genetics)</term>
<term>Copper (metabolism)</term>
<term>Gene Duplication (MeSH)</term>
<term>Gene Expression Profiling (MeSH)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Genes, Plant (MeSH)</term>
<term>Genome, Plant (MeSH)</term>
<term>Membrane Transport Proteins (chemistry)</term>
<term>Membrane Transport Proteins (genetics)</term>
<term>Membrane Transport Proteins (metabolism)</term>
<term>Multigene Family (MeSH)</term>
<term>Organ Specificity (genetics)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Proteins (chemistry)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Populus (genetics)</term>
<term>Promoter Regions, Genetic (genetics)</term>
<term>Sequence Alignment (MeSH)</term>
<term>Stress, Physiological (genetics)</term>
<term>Subcellular Fractions (metabolism)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Alignement de séquences (MeSH)</term>
<term>Analyse de profil d'expression de gènes (MeSH)</term>
<term>Chromosomes de plante (génétique)</term>
<term>Cuivre (métabolisme)</term>
<term>Duplication de gène (MeSH)</term>
<term>Famille multigénique (MeSH)</term>
<term>Fractions subcellulaires (métabolisme)</term>
<term>Gènes de plante (MeSH)</term>
<term>Génome végétal (MeSH)</term>
<term>Phylogenèse (MeSH)</term>
<term>Populus (génétique)</term>
<term>Protéines de transport membranaire (composition chimique)</term>
<term>Protéines de transport membranaire (génétique)</term>
<term>Protéines de transport membranaire (métabolisme)</term>
<term>Protéines végétales (composition chimique)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Régions promotrices (génétique) (génétique)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Spécificité d'organe (génétique)</term>
<term>Stress physiologique (génétique)</term>
<term>Séquence d'acides aminés (MeSH)</term>
<term>Transport biologique (génétique)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Membrane Transport Proteins</term>
<term>Plant Proteins</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Membrane Transport Proteins</term>
<term>Plant Proteins</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Copper</term>
<term>Membrane Transport Proteins</term>
<term>Plant Proteins</term>
</keywords>
<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Protéines de transport membranaire</term>
<term>Protéines végétales</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Biological Transport</term>
<term>Chromosomes, Plant</term>
<term>Organ Specificity</term>
<term>Populus</term>
<term>Promoter Regions, Genetic</term>
<term>Stress, Physiological</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Chromosomes de plante</term>
<term>Populus</term>
<term>Protéines de transport membranaire</term>
<term>Protéines végétales</term>
<term>Régions promotrices (génétique)</term>
<term>Spécificité d'organe</term>
<term>Stress physiologique</term>
<term>Transport biologique</term>
</keywords>
<keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Subcellular Fractions</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Cuivre</term>
<term>Fractions subcellulaires</term>
<term>Protéines de transport membranaire</term>
<term>Protéines végétales</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Gene Duplication</term>
<term>Gene Expression Profiling</term>
<term>Gene Expression Regulation, Plant</term>
<term>Genes, Plant</term>
<term>Genome, Plant</term>
<term>Multigene Family</term>
<term>Phylogeny</term>
<term>Sequence Alignment</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Alignement de séquences</term>
<term>Analyse de profil d'expression de gènes</term>
<term>Duplication de gène</term>
<term>Famille multigénique</term>
<term>Gènes de plante</term>
<term>Génome végétal</term>
<term>Phylogenèse</term>
<term>Régulation de l'expression des gènes végétaux</term>
<term>Séquence d'acides aminés</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Copper transporters (COPT/Ctr) have important roles in the transport of copper (Cu) across the cell membrane in many different species. A comprehensive phylogeny and a molecular structure analysis of the COPT/Ctr family in plants and animals are presented, with an emphasis and bioinformatic analysis of the copper transporter family in Populus trichocarpa (PtCOPT). Structural analyses of PtCOPTs showed that most have 3 transmembrane domains (TMDs), with an exception of PtCOPT4 (2 TMDs). Gene structure, gene chromosomal location, and synteny analyses of PtCOPTs demonstrated that tandem and segmental duplications have likely contributed to the expansion and evolution of the PtCOPTs. Additionally, promoter analyses showed that the function of PtCOPTs is related to Cu and ferrum (Fe) transport. Tissue-specific expression of PtCOPT genes showed that most had relatively high transcript levels in roots and leaves. Quantitative real-time RT-PCR (qRT-PCR) analysis revealed that the expression of PtCOPT genes were induced not only in limited and excessive Cu, Fe, zinc (Zn) and manganese (Mn) stress, but also in lead (Pb), and cadmium (Cd) stress. </div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26581045</PMID>
<DateCompleted><Year>2017</Year>
<Month>01</Month>
<Day>09</Day>
</DateCompleted>
<DateRevised><Year>2020</Year>
<Month>09</Month>
<Day>30</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1873-2690</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>97</Volume>
<PubDate><Year>2015</Year>
<Month>Dec</Month>
</PubDate>
</JournalIssue>
<Title>Plant physiology and biochemistry : PPB</Title>
<ISOAbbreviation>Plant Physiol Biochem</ISOAbbreviation>
</Journal>
<ArticleTitle>Genome-wide identification and expression profiling of the copper transporter gene family in Populus trichocarpa.</ArticleTitle>
<Pagination><MedlinePgn>451-60</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1016/j.plaphy.2015.10.035</ELocationID>
<ELocationID EIdType="pii" ValidYN="Y">S0981-9428(15)30155-8</ELocationID>
<Abstract><AbstractText>Copper transporters (COPT/Ctr) have important roles in the transport of copper (Cu) across the cell membrane in many different species. A comprehensive phylogeny and a molecular structure analysis of the COPT/Ctr family in plants and animals are presented, with an emphasis and bioinformatic analysis of the copper transporter family in Populus trichocarpa (PtCOPT). Structural analyses of PtCOPTs showed that most have 3 transmembrane domains (TMDs), with an exception of PtCOPT4 (2 TMDs). Gene structure, gene chromosomal location, and synteny analyses of PtCOPTs demonstrated that tandem and segmental duplications have likely contributed to the expansion and evolution of the PtCOPTs. Additionally, promoter analyses showed that the function of PtCOPTs is related to Cu and ferrum (Fe) transport. Tissue-specific expression of PtCOPT genes showed that most had relatively high transcript levels in roots and leaves. Quantitative real-time RT-PCR (qRT-PCR) analysis revealed that the expression of PtCOPT genes were induced not only in limited and excessive Cu, Fe, zinc (Zn) and manganese (Mn) stress, but also in lead (Pb), and cadmium (Cd) stress. </AbstractText>
<CopyrightInformation>Copyright © 2015 Elsevier Masson SAS. All rights reserved.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Zhang</LastName>
<ForeName>Haizhen</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Yang</LastName>
<ForeName>Jingli</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Weida</ForeName>
<Initials>W</Initials>
<AffiliationInfo><Affiliation>Wildlife Protection Department, Inner Mongolia Forestry Industrial Group, Yakeshi, Inner Mongolia 022150, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Dandan</ForeName>
<Initials>D</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Hu</LastName>
<ForeName>Xiaoqing</ForeName>
<Initials>X</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Han</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wei</LastName>
<ForeName>Ming</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Liu</LastName>
<ForeName>Quangang</ForeName>
<Initials>Q</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Zhanchao</ForeName>
<Initials>Z</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Chenghao</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang 150040, China. Electronic address: chli0@163.com.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2015</Year>
<Month>11</Month>
<Day>02</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>France</Country>
<MedlineTA>Plant Physiol Biochem</MedlineTA>
<NlmUniqueID>9882449</NlmUniqueID>
<ISSNLinking>0981-9428</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D026901">Membrane Transport Proteins</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>789U1901C5</RegistryNumber>
<NameOfSubstance UI="D003300">Copper</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001692" MajorTopicYN="N">Biological Transport</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032461" MajorTopicYN="N">Chromosomes, Plant</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D003300" MajorTopicYN="N">Copper</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020440" MajorTopicYN="N">Gene Duplication</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020869" MajorTopicYN="Y">Gene Expression Profiling</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018506" MajorTopicYN="Y">Gene Expression Regulation, Plant</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017343" MajorTopicYN="N">Genes, Plant</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018745" MajorTopicYN="Y">Genome, Plant</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D026901" MajorTopicYN="N">Membrane Transport Proteins</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005810" MajorTopicYN="Y">Multigene Family</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009928" MajorTopicYN="N">Organ Specificity</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D011401" MajorTopicYN="N">Promoter Regions, Genetic</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D016415" MajorTopicYN="N">Sequence Alignment</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D013312" MajorTopicYN="N">Stress, Physiological</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D013347" MajorTopicYN="N">Subcellular Fractions</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">COPT/Ctr</Keyword>
<Keyword MajorTopicYN="N">Copper</Keyword>
<Keyword MajorTopicYN="N">Gene expression</Keyword>
<Keyword MajorTopicYN="N">Heavy metal</Keyword>
<Keyword MajorTopicYN="N">Poplar</Keyword>
<Keyword MajorTopicYN="N">PtCOPT</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year>
<Month>08</Month>
<Day>24</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="revised"><Year>2015</Year>
<Month>10</Month>
<Day>28</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2015</Year>
<Month>10</Month>
<Day>28</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2015</Year>
<Month>11</Month>
<Day>19</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2015</Year>
<Month>11</Month>
<Day>19</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2017</Year>
<Month>1</Month>
<Day>10</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">26581045</ArticleId>
<ArticleId IdType="pii">S0981-9428(15)30155-8</ArticleId>
<ArticleId IdType="doi">10.1016/j.plaphy.2015.10.035</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>République populaire de Chine</li>
</country>
</list>
<tree><country name="République populaire de Chine"><noRegion><name sortKey="Zhang, Haizhen" sort="Zhang, Haizhen" uniqKey="Zhang H" first="Haizhen" last="Zhang">Haizhen Zhang</name>
</noRegion>
<name sortKey="Hu, Xiaoqing" sort="Hu, Xiaoqing" uniqKey="Hu X" first="Xiaoqing" last="Hu">Xiaoqing Hu</name>
<name sortKey="Li, Chenghao" sort="Li, Chenghao" uniqKey="Li C" first="Chenghao" last="Li">Chenghao Li</name>
<name sortKey="Li, Dandan" sort="Li, Dandan" uniqKey="Li D" first="Dandan" last="Li">Dandan Li</name>
<name sortKey="Liu, Quangang" sort="Liu, Quangang" uniqKey="Liu Q" first="Quangang" last="Liu">Quangang Liu</name>
<name sortKey="Wang, Han" sort="Wang, Han" uniqKey="Wang H" first="Han" last="Wang">Han Wang</name>
<name sortKey="Wang, Weida" sort="Wang, Weida" uniqKey="Wang W" first="Weida" last="Wang">Weida Wang</name>
<name sortKey="Wang, Zhanchao" sort="Wang, Zhanchao" uniqKey="Wang Z" first="Zhanchao" last="Wang">Zhanchao Wang</name>
<name sortKey="Wei, Ming" sort="Wei, Ming" uniqKey="Wei M" first="Ming" last="Wei">Ming Wei</name>
<name sortKey="Yang, Jingli" sort="Yang, Jingli" uniqKey="Yang J" first="Jingli" last="Yang">Jingli Yang</name>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration

HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001D34 | SxmlIndent | more

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001D34 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Bois
   |area=    PoplarV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:26581045
   |texte=   Genome-wide identification and expression profiling of the copper transporter gene family in Populus trichocarpa.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:26581045" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a PoplarV1

This area was generated with Dilib version V0.6.37.
Data generation: Wed Nov 18 12:07:19 2020. Site generation: Wed Nov 18 12:16:31 2020

	Serveur d'exploration sur le peuplier
	Attention, ce site est en cours de développement ! Attention, site généré par des moyens informatiques à partir de corpus bruts. Les informations ne sont donc pas validées.

Serveur d'exploration sur le peuplier

Genome-wide identification and expression profiling of the copper transporter gene family in Populus trichocarpa.

Genome-wide identification and expression profiling of the copper transporter gene family in Populus trichocarpa.

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki